HyperSpy Workshop 2024

May 13. till May 17.

HyperSpy Workshop 2024

This workshop is geared towards electron microscopy users who are interested in HyperSpy for their data analysis.

During this one-week workshop we will cover the basics of data handling in HyperSpy and then provide example work-flows for typical datasets that Users acquire at ePSIC. This will include spectroscopy datasets in STEM, i.e. spectrum images with EELS and / or EDXS, and also large 4D-STEM datasets acquired using the Medipix detector on E02. Machine learning toolboxes available within HyperSpy and their application on various data types will also be discussed. We will cover two packages dedicated to 4D-STEM data analysis, PyXEM and py4DSTEM, and a simulation package, abTEM.

We will have ample time for participants to discuss their own specific data analysis questions, with a dedicated “Bring your own data” session towards the end of the workshop.

Date: 13/05/20242024-05-13 - 17/05/20242024-05-17

Location: Online, Via Zoom

Link: Apply Here

Topics

The following topics will be covered over the duration of the workshop:

Introduction to HyperSpy
Python / hyperspy basics
Principal component analysis
Electron microscopy image simulation (using abTEM)
Energy dispersive X-ay
Electron energy loss spectroscopy data analysis
Atomic resolution image analysis (atomap)
Electron nano-beam diffraction analysis (PyXEM and Py4DSTEM)

Agenda

Please see below a provisional agenda for the upcoming event. A more accurate agenda will be provided closer to the event date:

This event will include a Preparation sesison, taking place on Friday 10th May between 11:00am and 12:00pm (BST)

Friday 10th May	11:00	Optional preparation session	Event Organisers
Friday 10th May	12:00	Session close
Monday 13th May	13:00	Welcome and Set-up
	13:15	Talk - What is HperSpy	Francisco de la Pena
	13:45	Practical - A practical introduction to Python/HyperSpy I	Mohsen Danaie/ Eric Prestat
	14:45	Coffee Break	Coffee Break
	15:00	Practical - A practical introduction to Python/HyperSpy II	Mohsen Danaie/ Eric Prestat
	16:30	Q&A
Tuesday 14th May	10:30	Talk - Model fitting introduction	Francisco de la Pena
	11:00	Practical - Model fitting	Francisco de la Pena
	12:00	Lunch Break	Lunch Break
	13:00	Talk - Machine learning introduction	Francisco de la Pena
	13:30	Practical - Machine learning	Francisco de la Pena
	14:30	Coffee Break	Coffee Break
	14:45	Practical - Introduction to abTEM	Jacob Madsen
	16:30	Q&A
Wednesday 15th May	10:30	Practical - Big data and lazy signals (including use of dask-distributed dashboard)	Magnus Nord
	12:00	Lunch Break	Lunch Break
	13:00	Practical - EELS Analysis in HyperSpy	Magnus Nord
	14:15	Coffee Break	Coffee Break
	14:30	Practical - Introduction to Py4DSTEM	Stephanie Ribet
	16:30	Q&A
Thursday 16th May	10:30	Talk - EDX analysis	Kate MacArthur
	11:00	Practical - EDX analysis in HyperSpy	Kate MacArthur
	12:00	Lunch Break	Lunch Break
	13:00	Practical - Atomap	Magnus Nord
	13:45	Practical - ParticleSpy	Tom Slater
	14:30	Coffee Break	Coffee Break
	14:45	Practical - SED analysis with PyXem	Carter Francis
	16:30	Q&A
Friday 17th May	10:30	Practical - Example data analysis with python libraries	Jacob Madsen
	11:30	Practical - How to make publication quality plots with matplotlib?	Magnus Nord
	12:00	Lunch Break	Lunch Break
	13:00	Talk - HyperSpy community / where to get help!	Francisco de la Pena / Eric Prestat
	13:30	Talk - Research / Applications talk	TBC
	14:00	Coffee Break	Coffee Break
	14:15	Practical - Bring your own data!	ALL
	16:00	Talk - Research / Applications talk	TBC
	16:45	Q&A + Closing remarks

Speakers

Fransisco de la Peña - University of Lille
Carter Francis - University of Wisconsin
Magnus Nord - Norwegian University of Science and Technology
Colin Ophus - Lawrence Berkely National Laboratory
Stephanie Ribet - Lawrence Berkely National Laboratory
Steven Zeltmann - Cornell University
Thomas Slater - Cardiff University
Katherine MacArthur - Oxford Instruments
Jacob Madsen - University of Vienna
Tara Mishra - Lawrence Berkely National Laboratory
Eric Prestat - UK Automic Energy Authority

Applications

Applications for HyperSpy 2024 are now open, and will be closing on Friday 26th April at 13:00 (BTS) 2024.

APPLY HERE

All applicants will be informed on the result of their application week commencing Monday 29th April 2024.

Please note that places on this workshop are limited. In the case of oversubscription there will be a limit of attendees for each organisation.

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