Beamline Phone Number:
+44 (0) 1235 778418
Principal Beamline Scientist:
Dave Allan
Tel: +44 (0) 1235 778644
E-mail: [email protected]
Email: [email protected]
Tel: +44 (0)1235 4494052
There are a couple of options available to reprocess your data using xia2. The best method will probably depend on which extra commands are likely to be required to get a successful outcome.
ISPyB can be used to submit xia2 reprocessing jobs with some extra options available, and with the output files conveniently accessible for download from the Logs and Files section.
Reprocessing jobs submitted through this route write the output files in a new sub-folder for that sample within the "Processed" directory.
More information on how to use ISPyB for reprocessing can be found in the ISPyB section of this manual.
Reprocessing jobs can also be submitted directly using the command line.
This is a more manual procedure, and a suitable directory structure needs to be created by hand. Reprocessing carried out this way must also be done within the "processing" directory.
More information on how to set reprocessing jobs running from the command line can be found in the XIA2-Command Line section of this manual.
ISPyB | Command Line | |
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Cell Information | ![]() |
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Select image range | ![]() |
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Resolution cut off | ![]() |
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Change index method | ![]() |
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Use reflection theshold | ![]() |
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Check for radiation damage | ![]() |
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Alternative absorption correction level | ![]() |
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Fix beam centre | ![]() |
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Files available to download in ISPyB | ![]() |
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Both options write input files for structure solution to the DataFiles directory.
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